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A Multicellular In Vitro Model of the Human Intestine with Immunocompetent Features Highlights Host-Pathogen Interactions During Early Salmonella Typhimurium Infection

Publikation
Damigos S, Caliskan A, Wajant G, Giddins S, Moldovan A, Kuhn S, Putz E, Dandekar T, Rudel T, Westermann AJ, Zdzieblo D (2025)
Advanced Science, 12, 9, e2411233, 10.1002/advs.202411233, 39807570

Meeting report ASOBIOTICS 2024: an interdisciplinary symposium on antisense-based programmable RNA antibiotics

Publikation
Vogel J, Faber F, Barquist L, Sparmann A, Popella L, Ghosh C (2025)
RNA, 31, 4, 465-474, 10.1261/rna.080347.124, 39814459

High-Throughput Tiling of Essential mRNAs Increases Potency of Antisense Antibiotics

Publikation
Danti G, Popella L, Vogel J, Maric HM (2025)
Advanced Science, (Online ahead of print), e2504284, 10.1002/advs.202504284, 40304263

AcrVIB1 inhibits CRISPR-Cas13b immunity by promoting unproductive crRNA binding accessible to RNase attack

Publikation
Wandera KG, Schmelz S, Migur A, Kibe A, Lukat P, Achmedov T, Caliskan N, Blankenfeldt W, Beisel CL (2025)
Molecular Cell, 85, 6, 1162-1175, 10.1016/j.molcel.2025.01.020, 39965569

Demultiplexing and barcode-specific adaptive sampling for nanopore direct RNA sequencing

Publikation
van der Toorn W, Bohn P, Liu-Wei W, Olguin-Nava M, Gribling-Burrer AS, Smyth RP, von Kleist M (2025)
Nature Communications, 16, 1, 3742, 10.1038/s41467-025-59102-9, 40258808

Guidelines for minimal reporting requirements, design and interpretation of experiments involving the use of eukaryotic dual gene expression reporters (MINDR)

Publikation
Loughran G, Andreev DE, Terenin IM, Namy O, Mikl M, Yordanova MM, McManus CJ, Firth AE, Atkins JF, Fraser CS, Ignatova Z, Iwasaki S, Kufel J, Larsson O, Leidel SA, Mankin AS, Mariotti M, Tanenbaum ME, Topisirovic I, Vázquez-Laslop N, Viero G, Caliskan N, Chen Y, Clark PL, Dinman JD, Farabaugh PJ, Gilbert WV, Ivanov P, Kieft JS, Mühlemann O, Sachs MS, Shatsky IN, Sonenberg N, Steckelberg AL, Willis AE, Woodside MT, Valasek LS, Dmitriev SE, Baranov PV (2025)
Nature Structural & Molecular Biology, 32, 3, 418-430, 10.1038/s41594-025-01492-x, 40033152

Optimization of Structure-Guided Development of Chemical Probes for the Pseudoknot RNA of the Frameshift Element in SARS-CoV-2

Publikation
Ceylan B, Adam J, Toews S, Kaiser F, Dörr J, Scheppa D, Tants JN, Smart A, Schoth J, Philipp S, Stirnal E, Ferner J, Richter C, Sreeramulu S, Caliskan N, Schlundt A, Weigand JE, Göbel M, Wacker A, Schwalbe H (2025)
Angewandte Chemie International Edition, 64, 9, e202417961, 10.1002/anie.202417961, 39887818

Streamlined and efficient genome editing in Cupriavidus necator H16 using an optimised SIBR-Cas system

Publikation
Della Valle S, Orsi E, Creutzburg SCA, Jansen LFM, Pentari EN, Beisel CL, Steel H, Nikel PI, Staals RHJ, Claassens NJ, van der Oost J, Huang WE, Patinios C (2025)
Trends in Biotechnology, 43, 6, 1470-1491, 10.1016/j.tibtech.2025.02.006, 40087133

Purification and in vivo, cell-free, and in vitro characterization of CRISPR-Cas12a2

Publikation
Schut FT, Hallmark T, Dmytrenko O, Jackson RN, Beisel CL (2025)
Methods In Enzymology, 712, 143-181, 10.1016/bs.mie.2025.01.032

Alginate-Dialdehyde-Based Reporter Ink Enabling Online Detection of Matrix Metalloproteinase Activity of Encapsulated Cells

Publikation
Gantert B, Karakaya E, Hofmann F, Jungst T, Meinel L, Bosserhoff AK, Detsch R, Lühmann T (2025)
ACS Biomaterials Science & Engineering, 11, 4, 2435-2447, 10.1021/acsbiomaterials.4c02399, 40052617