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The Life-Cycle of the HIV-1 Gag-RNA Complex

Publikation
Mailler E, Bernacchi S, Marquet R, Paillart J, Vivet-Boudou V, Smyth RP (2016)
Viruses, 8, 9, E248, 10.3390/v8090248, 27626439

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

Publikation
Jiang Y, Oron TR, Clark WT, Bankapur AR, D'Andrea D, Lepore R, Funk CS, Kahanda I, Verspoor KM, Ben-Hur A, Koo DC, Penfold-Brown D, Shasha D, Youngs N, Bonneau R, Lin A, Sahraeian SM, Martelli PL, Profiti G, Casadio R, Cao R, Zhong Z, Cheng J, Altenhoff A, Skunca N, Dessimoz C, Dogan T, Hakala K, Kaewphan S, Mehryary F, Salakoski T, Ginter F, Fang H, Smithers B, Oates M, Gough J, Törönen P, Koskinen P, Holm L, Chen C, Hsu W, Bryson K, Cozzetto D, Minneci F, Jones DT, Chapman S, Bkc D, Khan IK, Kihara D, Ofer D, Rappoport N, Stern A, Cibrian-Uhalte E, Denny P, Foulger RE, Hieta R, Legge D, Lovering RC, Magrane M, Melidoni AN, Mutowo-Meullenet P, Pichler K, Shypitsyna A, Li B, Zakeri P, ElShal S, Tranchevent L, Das S, Dawson NL, Lee D, Lees JG, Sillitoe I, Bhat P, Nepusz T, Romero AE, Sasidharan R, Yang H, Paccanaro A, Gillis J, Sedeño-Cortés AE, Pavlidis P, Feng S, Cejuela JM, Goldberg T, Hamp T, Richter L, Salamov A, Gabaldon T, Marcet-Houben M, Supek F, Gong Q, Ning W, Zhou Y, Tian W, Falda M, Fontana P, Lavezzo E, Toppo S, Ferrari C, Giollo M, Piovesan D, Tosatto SC, Del Pozo A, Fernández JM, Maietta P, Valencia A, Tress ML, Benso A, Di Carlo S, Politano G, Savino A, Rehman HU, Re M, Mesiti M, Valentini G, Bargsten JW, van Dijk AD, Gemovic B, Glisic S, Perovic V, Veljkovic V, Veljkovic N, Almeida-E-Silva DC, Vencio RZ, Sharan M, Vogel J, Kansakar L, Zhang S, Vucetic S, Wang Z, Sternberg MJ, Wass MN, Huntley RP, Martin MJ, O'Donovan C, Robinson PN, Moreau Y, Tramontano A, Babbitt PC, Brenner SE, Linial M, Orengo CA, Rost B, Greene CS, Mooney SD, Friedberg I, Radivojac P (2016)
Genome Biology, 17, 1, 184, 10.1186/s13059-016-1037-6, 27604469

Rethinking the Hierarchy of Sugar Utilization in Bacteria

Publikation
Beisel CL, Afroz T (2016)
Journal of Bacteriology, 198, 3, 374-376, 10.1128/JB.00890-15

Studying RNA Homology and Conservation with Infernal: From Single Sequences to RNA Families

Publikation
Barquist L, Burge SW, Gardner PP (2016)
Current Protocols in Bioinformatics, 54, 12.13.1-12.13.25, 10.1002/cpbi.4, 27322404

MIMEAnTo: profiling functional RNA in mutational interference mapping experiments

Publikation
Smith MR, Smyth RP, Marquet R, Kleist M (2016)
Bioinformatics, 32, 21, 3369-3370, 10.1093/bioinformatics/btw479, 27402903

The CRISPR RNA-guided surveillance complex in Escherichia coli accommodates extended RNA spacers

Publikation
Luo ML, Jackson RN, Denny SR, Tokmina-Lukaszewska M, Maksimchuk KR, Lin W, Bothner B, Wiedenheft B, Beisel CL (2016)
Nucleic Acids Research, 44, 15, 7385-94, 10.1093/nar/gkw421, 27174938

Single-cell RNA-seq ties macrophage polarization to growth rate of intracellular Salmonella

Publikation
Saliba AE, Li L, Westermann AJ, Appenzeller S, Stapels DA, Schulte LN, Helaine S, Vogel J (2016)
Nature Microbiology, 2, 16206, 10.1038/nmicrobiol.2016.206, 27841856

The target spectrum of SdsR small RNA in Salmonella

Publikation
Fröhlich KS, Haneke K, Papenfort K, Vogel J (2016)
Nucleic Acids Research, 44, 21, 10406-22, 10.1093/nar/gkw632, 27407104

Molecular phenotyping of infection-associated small non-coding RNAs

Publikation
Barquist L, Westermann AJ, Vogel J (2016)
Philosophical Transactions of the Royal Society of London B: Biological Sciences, 371, 1707, 20160081, 10.1098/rstb.2016.0081, 27672158

cis-Encoded Small RNAs, a Conserved Mechanism for Repression of Polysaccharide Utilization in Bacteroides

Publikation
Cao Y, Förstner KU, Vogel J, Smith CJ (2016)
Journal of Bacteriology, 198, 18, 2410-8, 10.1128/JB.00381-16, 27353652