Prof Antoine-Emmanuel Saliba
About
Antoine-Emmanuel Saliba studied biochemical engineering at INSA Toulouse (France) and received his PhD in the research group of Jean-Louis Viovy at the Institut Curie (Paris, France). During this time, he developed microfluid-based systems for sorting and analysing rare subpopulations of cancer cells. He then worked as an EIPOD fellow at the European Molecular Biology Laboratory (Heidelberg, Germany) and was involved in the development of innovative systems biology methods for the analysis of protein-lipid interactions. He then joined Jörg Vogel's laboratory in Würzburg as a senior postdoctoral fellow and established single-cell RNA-sequencing to track the fate of individual cells during an infection with Salmonella enterica. Since 2017, he has led the Single-cell Analysis group at HIRI. As of 2023, he also holds a professorship (W2) at the Faculty of Medicine of the University of Würzburg.
2025
Resolving spatiotemporal dynamics in bacterial multicellular populations: approaches and challenges
Espinoza Miranda SS, Abbaszade G, Hess WR, Drescher K, Saliba AE, Zaburdaev V, Chai L, Dreisewerd K, Grünberger A, Westendorf C, Müller S, Mascher T (2025)
Microbiology and Molecular Biology Reviews (Online ahead of print): e0013824DOI: 10.1128/mmbr.00138-24
2024
Alternating high-fat diet enhances atherosclerosis by neutrophil reprogramming
Lavillegrand JR, Al-Rifai R, Thietart S, Guyon T, Vandestienne M, Cohen R, Duval V, Zhong X, Yen D, Ozturk M, …, Riksen NP, Ait-Oufella H (2024)
Nature 634 (8033): 447-456DOI: 10.1038/s41586-024-07693-6
A novel in vitro tubular model to recapitulate features of distal airways: The bronchioid
Maurat E, Raasch K, Leipold AM, Henrot P, Zysman M, Prevel R, Trian T, Krammer T, Bergeron V, Thumerel M, …, Recher G, Dupin I (2024)
The European Respiratory journal 64 (4)DOI: 10.1183/13993003.00562-2024
Neural network-assisted humanisation of COVID-19 hamster transcriptomic data reveals matching severity states in human disease
Friedrich VD, Pennitz P, Wyler E, Adler JM, Postmus D, Müller K, Teixeira Alves LG, Prigann J, Pott F, Vladimirova D, …, Kirsten H, Nouailles G (2024)
EBioMedicine 108: 105312DOI: 10.1016/j.ebiom.2024.105312
Characterization and implementation of the MarathonRT template-switching reaction to expand the capabilities of RNA-Seq
Guo LT, Grinko A, Olson S, Leipold A, Graveley B, Saliba AE, Pyle AM (2024)
RNA 30 (11): 1495–1512DOI: 10.1261/rna.080032.124
The life-saving benefit of dexamethasone in severe COVID-19 is linked to a reversal of monocyte dysregulation
Knoll R, Helbig ET, Dahm K, Bolaji O, Hamm F, Dietrich O, van Uelft M, Müller S, Bonaguro L, Schulte-Schrepping J, …, Aschenbrenner AC, Kurth F (2024)
Cell 187 (16): 4318-4335.e20DOI: 10.1016/j.cell.2024.06.014
L-Wnk1 Deletion in Smooth Muscle Cells Causes Aortitis and Inflammatory Shift
Quelquejay H, Al-Rifai R, Silvestro M, Vandestienne M, Ferreira I, Mirault T, Henrion D, Zhong X, Santos-Zas I, Goudot G, …, Jeunemaitre X, Ait-Oufella H (2024)
Circulation Research 135 (4): 488-502DOI: 10.1161/CIRCRESAHA.124.324366
CD8+ T Cells Drive Plaque Smooth Muscle Cell Dedifferentiation in Experimental Atherosclerosis
Schäfer S, Gogiraju R, Rösch M, Kerstan Y, Beck L, Garbisch J, Saliba AE, Gisterå A, Hermanns HM, Boon L, …, Cochain C, Zernecke A (2024)
Arteriosclerosis Thrombosis, and Vascular biology 44 (8): 1852-1872DOI: 10.1161/ATVBAHA.123.320084
Characterization of a Human Respiratory Mucosa Model to Study Odorant Metabolism
Mérignac-Lacombe J, Kornbausch N, Sivarajan R, Boichot V, Berg K, Oberwinkler H, Saliba AE, Loos HM, Ehret Kasemo T, Scherzad A, …, Heydel JM, Steinke M (2024)
Journal of Agricultural and Food Chemistry 72 (22): 12696-12706DOI: 10.1021/acs.jafc.4c00752
TREM2 protects from atherosclerosis by limiting necrotic core formation
Piollet M, Porsch F, Rizzo G, Kapser F, Schulz DJ, Kiss MG, Schlepckow K, Morenas-Rodriguez E, Sen MO, Gropper J, …, Binder CJ, Cochain C (2024)
Nature Cardiovascular Research 3 (3): 269-282DOI: 10.1038/s44161-024-00429-9
Decoding spatiotemporal transcriptional dynamics and epithelial fibroblast crosstalk during gastroesophageal junction development through single cell analysis
Kumar N, Prakash PG, Wentland C, Kurian SM, Jethva G, Brinkmann V, Mollenkopf HJ, Krammer T, Toussaint C, Saliba AE, …, Gurumurthy RK, Chumduri C (2024)
Nature Communications 15 (1): 3064DOI: 10.1038/s41467-024-47173-z
Human cytomegalovirus exploits STING signaling and counteracts IFN/ISG induction to facilitate infection of dendritic cells
Costa B, Becker J, Krammer T, Mulenge F, Durán V, Pavlou A, Gern OL, Chu X, Li Y, Cicin-Šain L, …, Erhard F, Kalinke U (2024)
Nature Communications 15 (1): 1745DOI: 10.1038/s41467-024-45614-3
Sequential Antigen-loss and Branching Evolution in Lymphoma after CD19- and CD20-Targeted T-cell Redirecting Therapy
Duell J, Leipold AM, Appenzeller S, Fuhr V, Rauert-Wunderlich H, Da Vià MC, Dietrich O, Toussaint C, Imdahl F, Eisele F, …, Saliba AE, Rasche L (2024)
Blood 143 (8): 685-696DOI: 10.1182/blood.2023021672