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An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803
Publication
Mitschke J,
Georg J,
Scholz I,
Sharma CM,
Dienst D,
Bantscheff J,
Voss B,
Steglich C,
Wilde A,
Vogel J,
Hess WR
(2011)
PNAS, 108, 5, 2124-9, 10.1073/pnas.1015154108, 21245330
PNAS, 108, 5, 2124-9, 10.1073/pnas.1015154108, 21245330
The primary transcriptome of the major human pathogen Helicobacter pylori
Publication
Sharma CM,
Hoffmann S,
Darfeuille F,
Reignier J,
Findeiss S,
Sittka A,
Chabas S,
Reiche K,
Hackermüller J,
Reinhardt R,
Stadler PF,
Vogel J
(2010)
Nature, 464, 7286, 250-5, 10.1038/nature08756, 20164839
Nature, 464, 7286, 250-5, 10.1038/nature08756, 20164839
Analysis of A to I editing of miRNA in macrophages exposed to salmonella
Publication
Heale BS,
Eulalio A,
Schulte LN,
Vogel J,
O'Connell MA
(2010)
RNA Biology, 7, 5, 621-7, 10.4161/rna.7.5.13269, 21037424
RNA Biology, 7, 5, 621-7, 10.4161/rna.7.5.13269, 21037424
Identification of regulatory RNAs in Bacillus subtilis
Publication
Irnov I,
Sharma CM,
Vogel J,
Winkler WC
(2010)
Nucleic Acids Research, 38, 19, 6637-51, 10.1093/nar/gkq454, 20525796
Nucleic Acids Research, 38, 19, 6637-51, 10.1093/nar/gkq454, 20525796
Evidence for an autonomous 5′ target recognition domain in an Hfq-associated small RNA
Publication
Papenfort K,
Bouvier M,
Mika F,
Sharma CM,
Vogel J
(2010)
PNAS, 107, 47, 20435-40, 10.1073/pnas.1009784107, 21059903
PNAS, 107, 47, 20435-40, 10.1073/pnas.1009784107, 21059903
Deep sequencing-based discovery of the Chlamydia trachomatis transcriptome
Publication
Albrecht M,
Sharma CM,
Reinhardt R,
Vogel J,
Rudel T
(2010)
Nucleic Acids Research, 38, 3, 868-77, 10.1093/nar/gkp1032, 19923228
Nucleic Acids Research, 38, 3, 868-77, 10.1093/nar/gkp1032, 19923228
Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism
Publication
Bohn C,
Rigoulay C,
Chabelskaya S,
Sharma CM,
Marchais A,
Skorski P,
Borezée-Durant E,
Barbet R,
Jacquet E,
Jacq A,
Gautheret D,
Felden B,
Vogel J,
Bouloc P
(2010)
Nucleic Acids Research, 38, 19, 6620-36, 10.1093/nar/gkq462, 20511587
Nucleic Acids Research, 38, 19, 6620-36, 10.1093/nar/gkq462, 20511587
Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation
Publication
Pfeiffer V,
Papenfort K,
Lucchini S,
Hinton JC,
Vogel J
(2009)
Nature Structural & Molecular Biology, 16, 8, 840-6, 10.1038/nsmb.1631, 19620966
Nature Structural & Molecular Biology, 16, 8, 840-6, 10.1038/nsmb.1631, 19620966
Fast mapping of short sequences with mismatches, insertions and deletions using index structures
Publication
Hoffmann S,
Otto C,
Kurtz S,
Sharma CM,
Khaitovich P,
Vogel J,
Stadler PF,
Hackermüller J
(2009)
PLOS Computational Biology, 5, 9, e1000502, 10.1371/journal.pcbi.1000502, 19750212
PLOS Computational Biology, 5, 9, e1000502, 10.1371/journal.pcbi.1000502, 19750212
In vivo expression and purification of aptamer-tagged small RNA regulators
Publication
Said N,
Rieder R,
Hurwitz R,
Deckert J,
Urlaub H,
Vogel J
(2009)
Nucleic Acids Research, 37, 20, e133-e133, 10.1093/nar/gkp719
Nucleic Acids Research, 37, 20, e133-e133, 10.1093/nar/gkp719