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Discovery of new RNA classes and global RNA-binding proteins
Publication
Smirnov A,
Schneider C,
Hör J,
Vogel J
(2017)
Current Opinion in Microbiology, 39, 152-160, 10.1016/j.mib.2017.11.016, 29179042
Current Opinion in Microbiology, 39, 152-160, 10.1016/j.mib.2017.11.016, 29179042
MAPS integrates regulation of actin-targeting effector SteC into the virulence control network of Salmonella small RNA PinT
Publication
Correia Santos S,
Bischler T,
Westermann AJ,
Vogel J
(2021)
Cell Reports, 34, 5, 108722, 10.1016/j.celrep.2021.108722, 33535041
Cell Reports, 34, 5, 108722, 10.1016/j.celrep.2021.108722, 33535041
Grad-seq analysis of Enterococcus faecalis and Enterococcus faecium provides a global view of RNA and protein complexes in these two opportunistic pathogens
Publication
Michaux C,
Gerovac M,
Hansen EE,
Barquist L,
Vogel J
(2023)
microLife, 4, uqac027, 10.1093/femsml/uqac027, 37223738
microLife, 4, uqac027, 10.1093/femsml/uqac027, 37223738
Trans-Acting Small RNAs and Their Effects on Gene Expression in Escherichia coli and Salmonella enterica
Publication
Hör J,
Matera G,
Vogel J,
Gottesman S,
Storz G
(2020)
EcoSal Plus, 9, 1, 10.1128/ecosalplus.ESP-0030-2019, 10.1128/ecosalplus.ESP-0030-2019, 32213244
EcoSal Plus, 9, 1, 10.1128/ecosalplus.ESP-0030-2019, 10.1128/ecosalplus.ESP-0030-2019, 32213244
Single-cell RNA-sequencing reports growth-condition-specific global transcriptomes of individual bacteria
Publication
Imdahl F,
Vafadarnejad E,
Homberger C,
Saliba AE,
Vogel J
(2020)
Nature Microbiology, 5, 10, 1202–1206, 10.1038/s41564-020-0774-1, 32807892
Nature Microbiology, 5, 10, 1202–1206, 10.1038/s41564-020-0774-1, 32807892
Global Maps of ProQ Binding In Vivo Reveal Target Recognition via RNA Structure and Stability Control at mRNA 3' Ends
Publication
Holmqvist E,
Li L,
Bischler T,
Barquist L,
Vogel J
(2018)
Molecular Cell, 70, 5, 971-982.e6, 10.1016/j.molcel.2018.04.017, 29804828
Molecular Cell, 70, 5, 971-982.e6, 10.1016/j.molcel.2018.04.017, 29804828
INRI-seq enables global cell-free analysis of translation initiation and off-target effects of antisense inhibitors
Publication
Hör J,
Jung J,
Ðurica-Mitic S,
Barquist L,
Vogel J
(2022)
Nucleic Acids Research, 50, 22, e128, 10.1093/nar/gkac838, 36229039
Nucleic Acids Research, 50, 22, e128, 10.1093/nar/gkac838, 36229039
Design and off-target prediction for antisense oligomers targeting bacterial mRNAs with the MASON webserver
Publication
Jung JJ,
Popella L,
Do PT,
Pfau P,
Vogel J,
Barquist L
(2023)
RNA, 299, 5, 570-583, 10.1261/rna.079263.122, 36750372
RNA, 299, 5, 570-583, 10.1261/rna.079263.122, 36750372
Comprehensive analysis of PNA-based antisense antibiotics targeting various essential genes in uropathogenic Escherichia coli
Publication
Popella L,
Jung J,
Do PT,
Hayward RJ,
Barquist L,
Vogel J
(2022)
Nucleic Acids Research, 50, 11, 6435–6452, 10.1093/nar/gkac362, 35687096
Nucleic Acids Research, 50, 11, 6435–6452, 10.1093/nar/gkac362, 35687096
Single-Nucleotide RNA Maps for the Two Major Nosocomial Pathogens Enterococcus faecalis and Enterococcus faecium
Publication
Michaux C,
Hansen EE,
Jenniches L,
Gerovac M,
Barquist L,
Vogel J
(2020)
Frontiers in Cellular and Infection Microbiology, 10, 600325, 10.3389/fcimb.2020.600325, 33324581
Frontiers in Cellular and Infection Microbiology, 10, 600325, 10.3389/fcimb.2020.600325, 33324581