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Improved bacterial RNA-seq by Cas9-based depletion of ribosomal RNA reads
Publication
Prezza G,
Heckel T,
Dietrich S,
Homberger C,
Westermann AJ,
Vogel J
(2020)
RNA, 26, 8, 1069-1078, 10.1261/rna.075945.120, 32345633
RNA, 26, 8, 1069-1078, 10.1261/rna.075945.120, 32345633
The Major RNA-Binding Protein ProQ Impacts Virulence Gene Expression in Salmonella enterica Serovar Typhimurium
Publication
Westermann AJ,
Venturini E,
Sellin ME,
Förstner KU,
Hardt W,
Vogel J
(2019)
mBio, 10, 1, e02504-18, 10.1128/mBio.02504-18, 30602583
mBio, 10, 1, e02504-18, 10.1128/mBio.02504-18, 30602583
The primary transcriptome of Neisseria meningitidis and its interaction with the RNA chaperone Hfq
Publication
Heidrich N,
Bauriedl S,
Barquist L,
Li L,
Schoen C,
Vogel J
(2017)
Nucleic Acids Research, 45, 10, 6147-6167, 10.1093/nar/gkx168, 28334889
Nucleic Acids Research, 45, 10, 6147-6167, 10.1093/nar/gkx168, 28334889
Einzelzell-RNA-Sequenzierung beleuchtet den Infektionsprozess
Publication
Saliba AE,
Westermann AJ,
Vogel J
(2017)
BIOspektrum, 23, 5, 525-528, 10.1007/s12268-017-0836-y
BIOspektrum, 23, 5, 525-528, 10.1007/s12268-017-0836-y
Resolving host-pathogen interactions by dual RNA-seq
Publication
Westermann AJ,
Barquist L,
Vogel J
(2017)
PLOS Pathogens, 13, 2, e1006033, 10.1371/journal.ppat.1006033, 28207848
PLOS Pathogens, 13, 2, e1006033, 10.1371/journal.ppat.1006033, 28207848
Molecular phenotyping of infection-associated small non-coding RNAs
Publication
Barquist L,
Westermann AJ,
Vogel J
(2016)
Philosophical Transactions of the Royal Society of London B: Biological Sciences, 371, 1707, 20160081, 10.1098/rstb.2016.0081, 27672158
Philosophical Transactions of the Royal Society of London B: Biological Sciences, 371, 1707, 20160081, 10.1098/rstb.2016.0081, 27672158
Global RNA profiles show target selectivity and physiological effects of peptide-delivered antisense antibiotics
Publication
Popella L,
Jung J,
Popova K,
Ðurica-Mitic S,
Barquist L,
Vogel J
(2021)
Nucleic Acids Research, 49, 8, 4705-4724, 10.1093/nar/gkab242, 33849070
Nucleic Acids Research, 49, 8, 4705-4724, 10.1093/nar/gkab242, 33849070
Grad-seq shines light on unrecognized RNA and protein complexes in the model bacterium Escherichia coli
Publication
Hör J,
Di Giorgio S,
Gerovac M,
Venturini E,
Förstner KU,
Vogel J
(2020)
Nucleic Acids Research, 48, 16, 9301-9319, 10.1093/nar/gkaa676, 32813020
Nucleic Acids Research, 48, 16, 9301-9319, 10.1093/nar/gkaa676, 32813020
Global discovery of bacterial RNA-binding proteins by RNase-sensitive gradient profiles reports a new FinO domain protein
Publication
Gerovac M,
El Mouali Y,
Kuper J,
Kisker C,
Barquist L,
Vogel J
(2020)
RNA, 26, 10, 1448-1463, 10.1261/rna.076992.120, 32646969
RNA, 26, 10, 1448-1463, 10.1261/rna.076992.120, 32646969
Cellular RNA Targets of Cold Shock Proteins CspC and CspE and Their Importance for Serum Resistance in Septicemic Escherichia coli
Publication
Yair Y,
Michaux C,
Biran D,
Bernhard J,
Vogel J,
Barquist L,
Ron EZ
(2022)
mSystems, 7, 4, e0008622, 10.1128/msystems.00086-22, 35695420
mSystems, 7, 4, e0008622, 10.1128/msystems.00086-22, 35695420